STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0221Possible glycosyltransferase group 1; Identified by match to protein family HMM PF00534. (380 aa)    
Predicted Functional Partners:
sync_0223
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
 
  
 0.875
sync_0222
Identified by similarity to SP:Q9R9N1; match to protein family HMM PF00534.
 
    
0.837
sync_0220
Possible glycosyltransferase family 1; Identified by match to protein family HMM PF00534.
       0.746
sync_0219
ATP-binding ABC transporter family protein; Identified by match to protein family HMM PF00005.
       0.613
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
   
 
 0.532
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.506
sync_0218
Hypothetical protein; Identified by Glimmer2; putative.
       0.465
sync_0150
Identified by match to protein family HMM PF02706.
 
  
 0.462
sync_0216
Heme oxygenase; Identified by match to protein family HMM PF01126.
   
   0.438
sync_0224
Hypothetical protein; Identified by Glimmer2; putative.
       0.436
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (26%) [HD]