Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sync_0241Rubredoxin; Identified by match to protein family HMM PF00301. (146 aa)    
Predicted Functional Partners:
sync_0240
Photosystem II stability/assembly factor HCF136; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
 
   
 0.961
sync_0057
Putative photosystem I assembly related protein Ycf37; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
   
 0.779
sync_2096
Conserved hypothetical protein.
  
   
 0.775
thf1
Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.
  
    0.761
sync_1994
Identified by match to protein family HMM PF06485.
  
    0.759
sync_2547
VKORC1/thioredoxin domain protein; Identified by match to protein family HMM PF07884.
  
  
 0.747
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
     0.742
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
   
 0.736
sync_2925
Uncharacterized membrane protein.
  
    0.736
sync_1432
Uncharacterized membrane protein.
  
     0.733
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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