STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0253Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family. (404 aa)    
Predicted Functional Partners:
sync_0192
Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.823
sync_0280
Predicted dehydrogenase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.823
sync_0254
Thioredoxin family protein.
       0.771
sync_1705
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.580
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.566
sync_0255
Lipoprotein, putative.
       0.554
sync_0150
Identified by match to protein family HMM PF02706.
  
  
 0.531
cugP
Nucleotidyl transferase family protein; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.
  
  
 0.530
sync_0160
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.516
sync_0185
Conserved hypothetical protein.
 
  
 0.502
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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