sync_0261 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0261

Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055. (504 aa)

Predicted Functional Partners:

sync_0156

0.692

hisB

0.627

sync_2491

0.575

sync_0258

0.504

sync_1516

0.491

sync_1457

0.478

sync_0259

0.476

sync_1595

0.474

sync_1563

0.458

sync_0262

0.429

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hisB	sync_0156	sync_0260	sync_0156	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.402
hisB	sync_0258	sync_0260	sync_0258	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.650
hisB	sync_0259	sync_0260	sync_0259	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	Conserved hypothetical protein.	0.603
hisB	sync_0261	sync_0260	sync_0261	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	0.627
sync_0156	hisB	sync_0156	sync_0260	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	0.402
sync_0156	sync_0258	sync_0156	sync_0258	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.929
sync_0156	sync_0261	sync_0156	sync_0261	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	0.692
sync_0156	sync_1457	sync_0156	sync_1457	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	0.965
sync_0156	sync_1563	sync_0156	sync_1563	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.	0.881
sync_0156	sync_2491	sync_0156	sync_2491	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00614.	0.621
sync_0258	hisB	sync_0258	sync_0260	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	0.650
sync_0258	sync_0156	sync_0258	sync_0156	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.929
sync_0258	sync_0259	sync_0258	sync_0259	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Conserved hypothetical protein.	0.773
sync_0258	sync_0261	sync_0258	sync_0261	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	0.504
sync_0259	hisB	sync_0259	sync_0260	Conserved hypothetical protein.	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	0.603
sync_0259	sync_0258	sync_0259	sync_0258	Conserved hypothetical protein.	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.773
sync_0259	sync_0261	sync_0259	sync_0261	Conserved hypothetical protein.	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	0.476
sync_0261	hisB	sync_0261	sync_0260	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	Imidazoleglycerol-phosphate dehydratase; Identified by match to protein family HMM PF00475.	0.627
sync_0261	sync_0156	sync_0261	sync_0156	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.692
sync_0261	sync_0258	sync_0261	sync_0258	Retinal pigment epithelial membrane protein; Identified by match to protein family HMM PF03055.	Enoyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.504