sync_0267 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0267

Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690. (382 aa)

Predicted Functional Partners:

sync_2443

0.743

sync_1545

0.698

sync_0266

0.556

sync_0154

0.491

polA

0.488

sync_0573

0.481

sync_0156

0.426

sync_2693

0.417

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
polA	sync_0154	sync_0928	sync_0154	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Membrane protein, putative.	0.501
polA	sync_0156	sync_0928	sync_0156	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.826
polA	sync_0267	sync_0928	sync_0267	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	0.488
polA	sync_0573	sync_0928	sync_0573	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.554
sync_0154	polA	sync_0154	sync_0928	Membrane protein, putative.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.501
sync_0154	sync_0156	sync_0154	sync_0156	Membrane protein, putative.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.999
sync_0154	sync_0267	sync_0154	sync_0267	Membrane protein, putative.	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	0.491
sync_0154	sync_0573	sync_0154	sync_0573	Membrane protein, putative.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.786
sync_0156	polA	sync_0156	sync_0928	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.826
sync_0156	sync_0154	sync_0156	sync_0154	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Membrane protein, putative.	0.999
sync_0156	sync_0267	sync_0156	sync_0267	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	0.426
sync_0156	sync_0573	sync_0156	sync_0573	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.966
sync_0266	sync_0267	sync_0266	sync_0267	Conserved hypothetical protein; Identified by similarity to GB:CAE22049.1.	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	0.556
sync_0267	polA	sync_0267	sync_0928	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.488
sync_0267	sync_0154	sync_0267	sync_0154	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	Membrane protein, putative.	0.491
sync_0267	sync_0156	sync_0267	sync_0156	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.426
sync_0267	sync_0266	sync_0267	sync_0266	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	Conserved hypothetical protein; Identified by similarity to GB:CAE22049.1.	0.556
sync_0267	sync_0573	sync_0267	sync_0573	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.481
sync_0267	sync_1545	sync_0267	sync_1545	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	ABC-type Fe3+ transport system periplasmic component; Identified by match to protein family HMM PF01547.	0.698
sync_0267	sync_2443	sync_0267	sync_2443	Possible transporter, MFS family protein; Identified by match to protein family HMM PF07690.	Transporter, ZIP family protein.	0.743