STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0277Possible Occludin/ELL family protein. (199 aa)    
Predicted Functional Partners:
sync_0275
Glycine cleavage T-protein (aminomethyl transferase) superfamily protein; Identified by match to protein family HMM PF01571.
       0.572
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.572
sync_0279
Conserved membrane protein containing two CBS domains; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.
       0.523
sync_0280
Predicted dehydrogenase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
       0.421
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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