Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_0280Predicted dehydrogenase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894. (334 aa)    
Predicted Functional Partners:
sync_0253
Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.738
sync_0279
Conserved membrane protein containing two CBS domains; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.
 
    0.730
lysS
lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.675
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.667
sync_0179
Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.477
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.446
sync_0275
Glycine cleavage T-protein (aminomethyl transferase) superfamily protein; Identified by match to protein family HMM PF01571.
       0.445
sync_0277
Possible Occludin/ELL family protein.
       0.421
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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