Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| psbH | pth | sync_0310 | sync_0312 | Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.804 |
| psbH | sync_0313 | sync_0310 | sync_0313 | Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | Uncharacterized protein. | 0.790 |
| psbH | tatA | sync_0310 | sync_0311 | Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.804 |
| pth | psbH | sync_0312 | sync_0310 | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | 0.804 |
| pth | sync_0313 | sync_0312 | sync_0313 | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Uncharacterized protein. | 0.805 |
| pth | tatA | sync_0312 | sync_0311 | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.815 |
| sync_0313 | psbH | sync_0313 | sync_0310 | Uncharacterized protein. | Photosystem II reaction center protein PsbH; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | 0.790 |
| sync_0313 | pth | sync_0313 | sync_0312 | Uncharacterized protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.805 |
| sync_0313 | sync_0444 | sync_0313 | sync_0444 | Uncharacterized protein. | Conserved hypothetical protein. | 0.757 |
| sync_0313 | sync_0445 | sync_0313 | sync_0445 | Uncharacterized protein. | Conserved hypothetical protein. | 0.758 |
| sync_0313 | sync_0594 | sync_0313 | sync_0594 | Uncharacterized protein. | Conserved hypothetical protein. | 0.765 |
| sync_0313 | sync_0892 | sync_0313 | sync_0892 | Uncharacterized protein. | Ferredoxin; Identified by match to protein family HMM PF00111. | 0.770 |
| sync_0313 | sync_2268 | sync_0313 | sync_2268 | Uncharacterized protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE21616.1. | 0.758 |
| sync_0313 | sync_2570 | sync_0313 | sync_2570 | Uncharacterized protein. | TPR-repeat protein, specific for cyanobacteria. | 0.762 |
| sync_0313 | sync_2587 | sync_0313 | sync_2587 | Uncharacterized protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE22160.1; Belongs to the UPF0367 family. | 0.770 |
| sync_0313 | tatA | sync_0313 | sync_0311 | Uncharacterized protein. | Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.805 |
| sync_0444 | sync_0313 | sync_0444 | sync_0313 | Conserved hypothetical protein. | Uncharacterized protein. | 0.757 |
| sync_0444 | sync_0445 | sync_0444 | sync_0445 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.853 |
| sync_0444 | sync_0594 | sync_0444 | sync_0594 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.533 |
| sync_0444 | sync_2268 | sync_0444 | sync_2268 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by similarity to GB:CAE21616.1. | 0.477 |
page 1 of 4