STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0314Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (150 aa)    
Predicted Functional Partners:
sync_0315
Uncharacterized conserved membrane protein.
 
   
 0.958
sync_1289
Putative membrane protein, YjgP/YjgQ family protein; Identified by match to protein family HMM PF03739.
 
     0.775
sync_1542
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.771
sync_0678
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.764
sync_1500
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.763
sync_1501
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.763
sync_2581
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.758
sync_2579
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.757
sync_2215
Membrane protein, OMP85 family protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
     0.715
sync_2457
Conserved hypothetical protein; Identified by similarity to GB:CAE21762.1.
 
     0.699
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.