Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dcd | ndk | sync_0319 | sync_2741 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.924 |
| dcd | ntcA | sync_0319 | sync_0316 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | Nitrogen-responsive regulatory protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | 0.458 |
| dcd | polA | sync_0319 | sync_0928 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.445 |
| dcd | pyrE-2 | sync_0319 | sync_0364 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | PyrF/pyrE bifunctional enzyme; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.558 |
| dcd | pyrG | sync_0319 | sync_2858 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.920 |
| dcd | rph | sync_0319 | sync_0317 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.537 |
| dcd | sync_0318 | sync_0319 | sync_0318 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | Putative cob(I)alamin adenosyltransferase. | 0.813 |
| dcd | thyX | sync_0319 | sync_0320 | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.411 |
| ndk | dcd | sync_2741 | sync_0319 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | 0.924 |
| ndk | pyrE-2 | sync_2741 | sync_0364 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | PyrF/pyrE bifunctional enzyme; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.426 |
| ndk | pyrG | sync_2741 | sync_2858 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.936 |
| ntcA | dcd | sync_0316 | sync_0319 | Nitrogen-responsive regulatory protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | 0.458 |
| ntcA | rph | sync_0316 | sync_0317 | Nitrogen-responsive regulatory protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.539 |
| ntcA | sync_0318 | sync_0316 | sync_0318 | Nitrogen-responsive regulatory protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | Putative cob(I)alamin adenosyltransferase. | 0.458 |
| polA | dcd | sync_0928 | sync_0319 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | 0.445 |
| polA | pyrE-2 | sync_0928 | sync_0364 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | PyrF/pyrE bifunctional enzyme; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.729 |
| polA | pyrG | sync_0928 | sync_2858 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.486 |
| polA | rph | sync_0928 | sync_0317 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.406 |
| pyrE-2 | dcd | sync_0364 | sync_0319 | PyrF/pyrE bifunctional enzyme; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274. | 0.558 |
| pyrE-2 | ndk | sync_0364 | sync_2741 | PyrF/pyrE bifunctional enzyme; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.426 |
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