STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0323Identified by match to protein family HMM PF01464. (691 aa)    
Predicted Functional Partners:
sync_1343
Conserved hypothetical protein; Identified by similarity to GB:CAE20910.1.
 
  
 0.651
sync_1562
Identified by match to protein family HMM PF00498; match to protein family HMM PF00905; match to protein family HMM PF00912.
 
   
 0.603
glmM
Phosphotransferase superclass; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.586
sync_0324
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
sync_2702
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
   0.473
sync_0060
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
 
    0.460
sync_1079
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.459
sync_2717
Possible general (type II) secretion pathway protein D precursor; Identified by match to protein family HMM PF00263; match to protein family HMM PF07660; Belongs to the bacterial secretin family.
 
  
 0.430
sync_2248
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
 
    0.407
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (30%) [HD]