STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0327Putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein; Identified by match to protein family HMM PF04932. (447 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.806
sync_0326
BadF/BadG/BcrA/BcrD ATPase family superfamily; Identified by match to protein family HMM PF01869.
       0.784
sync_0329
Conserved hypothetical protein.
       0.784
sync_1365
Conserved hypothetical protein; Identified by similarity to GB:CAE20894.1.
 
     0.719
sync_2094
Conserved hypothetical protein; Identified by match to protein family HMM PF02620.
  
     0.664
sync_0330
Conserved hypothetical protein.
 
     0.631
sync_0160
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.621
sync_2581
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.569
sync_1501
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.567
sync_1500
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.565
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.