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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0331Conserved hypothetical protein. (103 aa)    
Predicted Functional Partners:
sync_0330
Conserved hypothetical protein.
       0.773
sync_0151
Putative phosphatase; Identified by match to protein family HMM PF00782.
  
     0.738
sync_1343
Conserved hypothetical protein; Identified by similarity to GB:CAE20910.1.
  
     0.736
sync_1356
Hypothetical protein.
  
     0.709
sync_1979
Conserved hypothetical protein.
  
     0.701
sync_0631
Ribonucleotide reductase (Class II); Identified by match to protein family HMM PF05768.
  
     0.678
sync_2052
Conserved hypothetical protein.
  
     0.672
sync_0813
Conserved hypothetical protein.
  
     0.655
sync_0076
Curli production assembly/transport component CsgG subfamily protein; Identified by match to protein family HMM PF03783.
  
     0.626
sync_0196
Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.
  
     0.618
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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