STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0336Beta-carotene hydroxylase; Identified by match to protein family HMM PF00487. (339 aa)    
Predicted Functional Partners:
sync_1804
Possible beta-carotene ketolase; Identified by match to protein family HMM PF00487.
     
 0.916
sync_0974
Lycopene beta cyclase; Identified by match to protein family HMM PF01266; match to protein family HMM PF05834; match to protein family HMM TIGR01790.
   
 
 0.909
sync_1305
Uncharacterized protein.
  
     0.766
sync_0330
Conserved hypothetical protein.
  
     0.757
sync_1203
Uncharacterized membrane protein.
  
     0.743
sync_2257
Uncharacterized conserved membrane protein.
  
     0.732
sync_2355
Possible high light inducible protein.
  
     0.704
sync_0697
Conserved hypothetical protein; Identified by similarity to GB:CAE08191.1.
  
     0.697
sync_0950
Conserved hypothetical protein.
  
     0.696
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.682
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.