STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0360Possible Vng0271c. (448 aa)    
Predicted Functional Partners:
sync_0361
Glycosidase; Identified by match to protein family HMM PF00128.
   
 0.968
sync_0362
Mannosyl-3-phosphoglycerate phosphatase homolog; Identified by match to protein family HMM TIGR01484; match to protein family HMM TIGR01486; match to protein family HMM TIGR02461.
 
  
  0.953
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
  
 
 0.882
sync_1016
Helix-turn-helix motif.
   
 
 0.707
sync_2144
Conserved hypothetical protein; Identified by similarity to GB:BAD78682.1.
   
 
 0.707
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.599
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.471
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.469
sync_0359
Cupin superfamily (DUF985) superfamily; Identified by match to protein family HMM PF06172.
       0.468
minD
Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.
  
 
 0.423
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.