Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_0360Possible Vng0271c. (448 aa)    
Predicted Functional Partners:
sync_0362
Mannosyl-3-phosphoglycerate phosphatase homolog; Identified by match to protein family HMM TIGR01484; match to protein family HMM TIGR01486; match to protein family HMM TIGR02461.
 
  
 0.979
sync_0361
Glycosidase; Identified by match to protein family HMM PF00128.
   
 0.970
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
  
 
 0.848
sync_1016
Helix-turn-helix motif.
   
 
 0.554
sync_2144
Conserved hypothetical protein; Identified by similarity to GB:BAD78682.1.
   
 
 0.554
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.552
stpA
Glucosylglycerol 3-phosphatase; Identified by match to protein family HMM TIGR02399.
      
 0.540
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.510
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.480
sync_0359
Cupin superfamily (DUF985) superfamily; Identified by match to protein family HMM PF06172.
       0.468
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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