STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0397Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)    
Predicted Functional Partners:
sync_2767
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.853
sync_0101
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.840
sync_2503
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.838
sync_0396
Possible fatty acid desaturase; Identified by match to protein family HMM PF00487.
       0.773
sync_2541
Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.697
sync_0929
Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.695
sync_1041
Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.690
sync_0395
Hypothetical protein; Identified by Glimmer2; putative.
       0.527
psaL
Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.
       0.513
psaI
Photosystem I reaction center subunit VIII; Identified by match to protein family HMM TIGR03052.
       0.431
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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