STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0461Putative glutamate--cysteine ligase; Identified by match to protein family HMM PF04107; match to protein family HMM TIGR02048. (381 aa)    
Predicted Functional Partners:
sync_0459
GNAT family acetyltransferase.
       0.813
sync_0462
Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715.
       0.813
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
       0.812
sync_1720
Conserved hypothetical protein.
  
   
 0.740
sync_1143
Conserved hypothetical protein; Identified by similarity to GB:CAE07418.1.
  
     0.738
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.736
sync_1559
Conserved hypothetical protein; Identified by similarity to GB:AAQ00075.1.
  
     0.697
sync_2053
Uncharacterized protein.
  
     0.674
psaD
Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531.
       0.669
sync_0464
Sensor histidine kinase; Identified by match to protein family HMM PF00512.
 
     0.658
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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