Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroC | aroH | sync_0358 | sync_2100 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.945 |
| aroC | sync_0462 | sync_0358 | sync_0462 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | 0.942 |
| aroC | sync_2656 | sync_0358 | sync_2656 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.872 |
| aroC | sync_2663 | sync_0358 | sync_2663 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Para-aminobenzoate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.888 |
| aroC | trpA | sync_0358 | sync_1910 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.783 |
| aroC | trpB | sync_0358 | sync_2633 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.564 |
| aroC | trpC | sync_0358 | sync_0751 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.428 |
| aroH | aroC | sync_2100 | sync_0358 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.945 |
| aroH | sync_0462 | sync_2100 | sync_0462 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | 0.905 |
| aroH | sync_2656 | sync_2100 | sync_2656 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.800 |
| aroH | sync_2663 | sync_2100 | sync_2663 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | Para-aminobenzoate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.814 |
| sync_0462 | aroC | sync_0462 | sync_0358 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.942 |
| sync_0462 | aroH | sync_0462 | sync_2100 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.905 |
| sync_0462 | sync_2656 | sync_0462 | sync_2656 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.873 |
| sync_0462 | sync_2663 | sync_0462 | sync_2663 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Para-aminobenzoate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.999 |
| sync_0462 | sync_2904 | sync_0462 | sync_2904 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Identified by match to protein family HMM PF00591; match to protein family HMM PF02885. | 0.925 |
| sync_0462 | trpA | sync_0462 | sync_1910 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.965 |
| sync_0462 | trpB | sync_0462 | sync_2633 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.906 |
| sync_0462 | trpC | sync_0462 | sync_0751 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.997 |
| sync_0462 | trpD | sync_0462 | sync_1637 | Putative anthranilate synthase component I; Identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.998 |
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