sync_0479 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0479

Predicted oxidoreductase; Identified by match to protein family HMM PF00248. (319 aa)

Predicted Functional Partners:

sync_1824

0.914

sync_0822

0.708

sync_0156

0.680

sync_0477

0.572

sync_0478

0.572

sync_0763

0.565

sync_0971

0.475

sync_1945

0.436

sync_2093

0.436

sync_1228

0.430

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0156	sync_0479	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	0.680
sync_0156	sync_0763	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00850.	0.942
sync_0156	sync_0822	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Alcohol dehydrogenase; Identified by match to protein family HMM PF00248.	0.810
sync_0156	sync_0971	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00478; match to protein family HMM TIGR01304.	0.674
sync_0156	sync_1228	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Uncharacterized membrane protein.	0.915
sync_0156	sync_1945	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	cbbX protein homolog; Identified by match to protein family HMM PF00004; match to protein family HMM TIGR02880.	0.883
sync_0156	sync_2093	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00004.	0.883
sync_0477	sync_0478	Hypothetical protein.	Conserved hypothetical protein.	0.773
sync_0477	sync_0479	Hypothetical protein.	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	0.572
sync_0478	sync_0477	Conserved hypothetical protein.	Hypothetical protein.	0.773
sync_0478	sync_0479	Conserved hypothetical protein.	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	0.572
sync_0479	sync_0156	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.680
sync_0479	sync_0477	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Hypothetical protein.	0.572
sync_0479	sync_0478	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Conserved hypothetical protein.	0.572
sync_0479	sync_0763	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Identified by match to protein family HMM PF00850.	0.565
sync_0479	sync_0822	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Alcohol dehydrogenase; Identified by match to protein family HMM PF00248.	0.708
sync_0479	sync_0971	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Identified by match to protein family HMM PF00478; match to protein family HMM TIGR01304.	0.475
sync_0479	sync_1228	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Uncharacterized membrane protein.	0.430
sync_0479	sync_1824	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.	0.914
sync_0479	sync_1945	Predicted oxidoreductase; Identified by match to protein family HMM PF00248.	cbbX protein homolog; Identified by match to protein family HMM PF00004; match to protein family HMM TIGR02880.	0.436