Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cpaA-1 | cpaB-1 | sync_0496 | sync_0495 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.994 |
| cpaA-1 | cpcS | sync_0496 | sync_0492 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.843 |
| cpaA-1 | cpeC | sync_0496 | sync_0513 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. | 0.906 |
| cpaA-1 | pebA | sync_0496 | sync_0491 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family. | 0.855 |
| cpaA-1 | pebB | sync_0496 | sync_0490 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family. | 0.841 |
| cpaA-1 | sync_0499 | sync_0496 | sync_0499 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Bilin biosynthesis protein cpeY. | 0.792 |
| cpaA-1 | sync_0506 | sync_0496 | sync_0506 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | CpeY protein; Identified by similarity to GB:CAA28262.1. | 0.792 |
| cpaA-1 | sync_2228 | sync_0496 | sync_2228 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | CpeY protein; Identified by match to protein family HMM PF03130. | 0.792 |
| cpaB-1 | cpaA-1 | sync_0495 | sync_0496 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | 0.994 |
| cpaB-1 | cpcS | sync_0495 | sync_0492 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.860 |
| cpaB-1 | cpeC | sync_0495 | sync_0513 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. | 0.905 |
| cpaB-1 | pebA | sync_0495 | sync_0491 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family. | 0.875 |
| cpaB-1 | pebB | sync_0495 | sync_0490 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family. | 0.855 |
| cpaB-1 | sync_0499 | sync_0495 | sync_0499 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Bilin biosynthesis protein cpeY. | 0.795 |
| cpaB-1 | sync_0506 | sync_0495 | sync_0506 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | CpeY protein; Identified by similarity to GB:CAA28262.1. | 0.784 |
| cpaB-1 | sync_2228 | sync_0495 | sync_2228 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | CpeY protein; Identified by match to protein family HMM PF03130. | 0.784 |
| cpcS | cpaA-1 | sync_0492 | sync_0496 | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | 0.843 |
| cpcS | cpaB-1 | sync_0492 | sync_0495 | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.860 |
| cpcS | cpeC | sync_0492 | sync_0513 | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. | 0.783 |
| cpcS | pcyA | sync_0492 | sync_1656 | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. | 0.520 |
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