Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cpaA-1 | cpaB-1 | sync_0496 | sync_0495 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.994 |
| cpaA-1 | cpcB | sync_0496 | sync_0489 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. | 0.776 |
| cpaA-1 | cpcE | sync_0496 | sync_0486 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130. | 0.797 |
| cpaA-1 | cpcF | sync_0496 | sync_0485 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130. | 0.775 |
| cpaA-1 | cpcS | sync_0496 | sync_0492 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.843 |
| cpaA-1 | cpcT | sync_0496 | sync_0487 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Protein of unknown function (DUF1001) superfamily protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.782 |
| cpaA-1 | cpcT-2 | sync_0496 | sync_0509 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.787 |
| cpaA-1 | pebA | sync_0496 | sync_0491 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family. | 0.855 |
| cpaA-1 | pebB | sync_0496 | sync_0490 | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family. | 0.841 |
| cpaB-1 | cpaA-1 | sync_0495 | sync_0496 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502. | 0.994 |
| cpaB-1 | cpcA | sync_0495 | sync_0488 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. | 0.930 |
| cpaB-1 | cpcE | sync_0495 | sync_0486 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130. | 0.811 |
| cpaB-1 | cpcF | sync_0495 | sync_0485 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130. | 0.787 |
| cpaB-1 | cpcS | sync_0495 | sync_0492 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.860 |
| cpaB-1 | cpcT | sync_0495 | sync_0487 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Protein of unknown function (DUF1001) superfamily protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.800 |
| cpaB-1 | cpcT-2 | sync_0495 | sync_0509 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.852 |
| cpaB-1 | pebA | sync_0495 | sync_0491 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family. | 0.875 |
| cpaB-1 | pebB | sync_0495 | sync_0490 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family. | 0.855 |
| cpcA | cpaB-1 | sync_0488 | sync_0495 | Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.930 |
| cpcA | cpcB | sync_0488 | sync_0489 | Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. | Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. | 0.999 |
page 1 of 6