STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0497Bilin biosynthesis protein mpeV; Identified by match to protein family HMM PF03130. (301 aa)    
Predicted Functional Partners:
sync_0501
Bilin biosynthesis protein mpeU; Identified by match to protein family HMM PF03130.
  
  
 
0.908
sync_0500
Bilin biosynthesis protein cpeZ; Identified by match to protein family HMM PF02985.
  
   
 0.836
sync_0499
Bilin biosynthesis protein cpeY.
 
   
 0.795
sync_0506
CpeY protein; Identified by similarity to GB:CAA28262.1.
 
   
 0.795
sync_2228
CpeY protein; Identified by match to protein family HMM PF03130.
 
   
 0.795
cpeC
Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.
  
   
 0.779
pebB
Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family.
  
   
 0.775
pebA
15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
  
   
 0.775
cpaA-1
C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.
  
   
 0.775
cpaA-2
C-phycoerythrin class II alpha chain; Identified by match to protein family HMM PF00502.
  
   
 0.774
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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