Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apcD | cpaB-1 | sync_1341 | sync_0495 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.733 |
| apcD | cpaB-2 | sync_1341 | sync_0505 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | C-phycoerythrin class II beta chain; Identified by match to protein family HMM PF00502. | 0.719 |
| apcD | cpcA | sync_1341 | sync_0488 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. | 0.864 |
| apcD | cpcB | sync_1341 | sync_0489 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339. | 0.844 |
| apcD | cpcE | sync_1341 | sync_0486 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130. | 0.809 |
| apcD | cpcT | sync_1341 | sync_0487 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Protein of unknown function (DUF1001) superfamily protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.786 |
| apcD | cpeC | sync_1341 | sync_0513 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. | 0.899 |
| apcD | mpeC | sync_1341 | sync_0502 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Phycoerythrin class II gamma chain, linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. | 0.774 |
| apcD | sync_0517 | sync_1341 | sync_0517 | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502. | 0.751 |
| cpaB-1 | apcD | sync_0495 | sync_1341 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | 0.733 |
| cpaB-1 | cpaB-2 | sync_0495 | sync_0505 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class II beta chain; Identified by match to protein family HMM PF00502. | 0.902 |
| cpaB-1 | cpcA | sync_0495 | sync_0488 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338. | 0.930 |
| cpaB-1 | cpcE | sync_0495 | sync_0486 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130. | 0.811 |
| cpaB-1 | cpcT | sync_0495 | sync_0487 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Protein of unknown function (DUF1001) superfamily protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. | 0.800 |
| cpaB-1 | cpeC | sync_0495 | sync_0513 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family. | 0.905 |
| cpaB-1 | mpeC | sync_0495 | sync_0502 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Phycoerythrin class II gamma chain, linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. | 0.774 |
| cpaB-1 | sync_0501 | sync_0495 | sync_0501 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Bilin biosynthesis protein mpeU; Identified by match to protein family HMM PF03130. | 0.766 |
| cpaB-1 | sync_0517 | sync_0495 | sync_0517 | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502. | 0.882 |
| cpaB-2 | apcD | sync_0505 | sync_1341 | C-phycoerythrin class II beta chain; Identified by match to protein family HMM PF00502. | Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502. | 0.719 |
| cpaB-2 | cpaB-1 | sync_0505 | sync_0495 | C-phycoerythrin class II beta chain; Identified by match to protein family HMM PF00502. | C-phycoerythrin class I beta chain; Identified by match to protein family HMM PF00502. | 0.902 |
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