sync_0516 protein (Synechococcus sp. CC9311)

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sync_0516

Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. (276 aa)

Predicted Functional Partners:

cpcA

0.990

cpcB

0.990

cpcF

0.976

cpcE

0.976

cpcG1

0.976

sync_0515

0.956

sync_1249

0.928

apcC

0.919

sync_0517

0.916

cpaA-1

0.906

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
apcC	cpaA-1	sync_2325	sync_0496	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	0.927
apcC	cpcA	sync_2325	sync_0488	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.959
apcC	cpcB	sync_2325	sync_0489	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.962
apcC	cpcE	sync_2325	sync_0486	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.840
apcC	cpcF	sync_2325	sync_0485	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130.	0.777
apcC	cpcG1	sync_2325	sync_2488	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.968
apcC	sync_0515	sync_2325	sync_0515	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774
apcC	sync_0516	sync_2325	sync_0516	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.919
apcC	sync_0517	sync_2325	sync_0517	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502.	0.935
apcC	sync_1249	sync_2325	sync_1249	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774
cpaA-1	apcC	sync_0496	sync_2325	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	0.927
cpaA-1	cpcB	sync_0496	sync_0489	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.776
cpaA-1	cpcE	sync_0496	sync_0486	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.797
cpaA-1	cpcF	sync_0496	sync_0485	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130.	0.775
cpaA-1	cpcG1	sync_0496	sync_2488	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.927
cpaA-1	sync_0515	sync_0496	sync_0515	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.767
cpaA-1	sync_0516	sync_0496	sync_0516	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.906
cpaA-1	sync_0517	sync_0496	sync_0517	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502.	0.904
cpaA-1	sync_1249	sync_0496	sync_1249	C-phycoerythrin class I alpha chain; Identified by match to protein family HMM PF00502.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.768
cpcA	apcC	sync_0488	sync_2325	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	0.959