sync_0516 protein (Synechococcus sp. CC9311)

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sync_0516

Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. (276 aa)

Predicted Functional Partners:

cpcA

0.987

cpcB

0.987

cpcF

0.976

cpcE

0.976

cpcG1

0.963

sync_0515

0.956

sync_1249

0.928

sync_0517

0.926

apcC

0.894

apcD

0.888

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
apcC	apcD	sync_2325	sync_1341	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	0.999
apcC	cpcA	sync_2325	sync_0488	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.995
apcC	cpcB	sync_2325	sync_0489	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.993
apcC	cpcE	sync_2325	sync_0486	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.891
apcC	cpcF	sync_2325	sync_0485	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130.	0.854
apcC	cpcG1	sync_2325	sync_2488	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.993
apcC	sync_0515	sync_2325	sync_0515	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774
apcC	sync_0516	sync_2325	sync_0516	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.894
apcC	sync_0517	sync_2325	sync_0517	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502.	0.925
apcC	sync_1249	sync_2325	sync_1249	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774
apcD	apcC	sync_1341	sync_2325	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	0.999
apcD	cpcA	sync_1341	sync_0488	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.	0.961
apcD	cpcB	sync_1341	sync_0489	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.	0.955
apcD	cpcE	sync_1341	sync_0486	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.891
apcD	cpcF	sync_1341	sync_0485	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130.	0.868
apcD	cpcG1	sync_1341	sync_2488	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.994
apcD	sync_0515	sync_1341	sync_0515	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774
apcD	sync_0516	sync_1341	sync_0516	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.888
apcD	sync_0517	sync_1341	sync_0517	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Possible Phycobilisome polypeptide; Identified by match to protein family HMM PF00502.	0.655
apcD	sync_1249	sync_1341	sync_1249	Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.	Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.	0.774