STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0525Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201. (209 aa)    
Predicted Functional Partners:
sync_0526
Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1.
       0.735
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.733
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.733
tyrA
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF02558; match to protein family HMM PF02737; match to protein family HMM PF03807.
   
    0.724
sync_2639
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.722
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
 
     0.684
sync_0539
Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481.
  
 
 0.652
sync_0527
Hypothetical protein; Identified by Glimmer2; putative.
       0.625
sync_0637
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.623
sync_1372
Phage integrase, putative; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
   
    0.623
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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