sync_0526 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_0526

Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1. (95 aa)

Predicted Functional Partners:

sync_0525

0.735

sync_0527

0.668

metK

0.645

sync_0528

0.630

sync_1820

0.615

gph

0.551

rpsA

0.532

sync_2171

0.523

secG

0.510

sync_1352

0.502

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gph	metK	sync_0530	sync_0529	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.722
gph	rpsA	sync_0530	sync_0531	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	0.802
gph	sync_0525	sync_0530	sync_0525	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201.	0.505
gph	sync_0526	sync_0530	sync_0526	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1.	0.551
gph	sync_0527	sync_0530	sync_0527	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Hypothetical protein; Identified by Glimmer2; putative.	0.613
gph	sync_0528	sync_0530	sync_0528	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.709
metK	gph	sync_0529	sync_0530	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	0.722
metK	rpsA	sync_0529	sync_0531	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	0.741
metK	sync_0525	sync_0529	sync_0525	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201.	0.684
metK	sync_0526	sync_0529	sync_0526	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1.	0.645
metK	sync_0527	sync_0529	sync_0527	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Hypothetical protein; Identified by Glimmer2; putative.	0.722
metK	sync_0528	sync_0529	sync_0528	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.826
rpsA	gph	sync_0531	sync_0530	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	0.802
rpsA	metK	sync_0531	sync_0529	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.741
rpsA	sync_0525	sync_0531	sync_0525	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201.	0.489
rpsA	sync_0526	sync_0531	sync_0526	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1.	0.532
rpsA	sync_0527	sync_0531	sync_0527	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	Hypothetical protein; Identified by Glimmer2; putative.	0.596
rpsA	sync_0528	sync_0531	sync_0528	Ribosomal protein S1; Identified by similarity to SP:P46228; match to protein family HMM PF00575.	Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370.	0.695
secG	sync_0526	sync_2277	sync_0526	Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Conserved hypothetical protein; Identified by similarity to GB:CAE08505.1.	0.510
sync_0525	gph	sync_0525	sync_0530	Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201.	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	0.505