Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sync_0539Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481. (368 aa)    
Predicted Functional Partners:
gspO
Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
  
  
 0.826
prmC
Methyltransferase, HemK family protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
  
 0.819
sync_2468
Mg chelatase homolog; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
 0.810
sync_0541
yrdC domain, putative; Identified by match to protein family HMM PF01300; Belongs to the SUA5 family.
       0.802
sync_0538
Predicted thioesterase; Identified by match to protein family HMM PF03061.
  
    0.708
sync_0718
DNA internalization competence protein, ComEC/Rec2 family protein; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
  
 0.684
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
   
    0.661
sync_0525
Conserved hypothetical protein; Identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201.
  
 
 0.652
cinA
Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
     
 0.563
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.558
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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