STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0551Neutral invertase like protein; Identified by match to protein family HMM PF04853. (492 aa)    
Predicted Functional Partners:
sync_0205
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.769
sync_0370
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.717
sync_0196
Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.
  
     0.664
sync_2936
Sucrose phosphate synthase; Identified by match to protein family HMM PF00534; match to protein family HMM TIGR02471; match to protein family HMM TIGR02472.
 
 
 0.663
ndhN
Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.643
ndhM
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.603
sync_0753
Hydrogenase accessory protein or high-affinity nickel-transport protein homolog, membrane protein.
  
     0.590
sync_0552
Hypothetical protein; Identified by Glimmer2; putative.
       0.571
sync_1271
Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
     0.543
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.537
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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