STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0570Identified by match to protein family HMM PF00128. (485 aa)    
Predicted Functional Partners:
malQ
4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
 
 0.992
sync_0567
Trehalose synthase; Identified by match to protein family HMM PF00128.
 
0.975
treX
Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.
 
 0.947
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
 0.945
sync_0205
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.929
sync_0975
Uncharacterized conserved protein; Identified by match to protein family HMM PF03065; Belongs to the glycosyl hydrolase 57 family.
     
 0.908
sync_0618
Amino acid permease.
   
 0.803
sync_2867
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
   
 0.803
glpK
Glycerol kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
 
 0.603
glpA
Glycerol dehydrogenase homolog; Identified by match to protein family HMM PF01266.
     
 0.576
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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