STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0597Possible cobalt transport protein; Identified by match to protein family HMM PF02361. (304 aa)    
Predicted Functional Partners:
sync_1560
Identified by match to protein family HMM PF02632.
 
 0.987
sync_2588
Possible ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.
 
 0.987
sync_1273
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.985
sync_2703
ABC transporter, ATP binding component, possibly for oligopeptides; Identified by match to protein family HMM PF00005.
  
 
 0.895
engA
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.881
sync_0598
Uncharacterized protein.
 
   
 0.847
cbiG/cobJ
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.
  
  
 0.756
sync_0599
Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.751
sync_2117
Conserved hypothetical protein; Identified by similarity to GB:CAE21526.1.
  
     0.736
sync_1911
Conserved hypothetical protein.
  
     0.734
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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