STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaGGlycosyl transferases group 1; Identified by match to protein family HMM PF00534. (399 aa)    
Predicted Functional Partners:
sync_2514
Possible sodium transporter, Trk family protein; Identified by match to protein family HMM PF02386.
    
 0.913
sync_2515
K+ transporter, Trk family protein; Identified by match to protein family HMM PF02254.
   
 
 0.909
sync_0603
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
       0.761
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.713
sync_1720
Conserved hypothetical protein.
  
  
 0.690
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.675
sync_1143
Conserved hypothetical protein; Identified by similarity to GB:CAE07418.1.
  
     0.661
yfiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.619
sync_1559
Conserved hypothetical protein; Identified by similarity to GB:AAQ00075.1.
  
     0.610
sync_2026
Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
     0.610
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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