STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdBL-cysteine/cystine lyase homolog; Identified by match to protein family HMM PF00266. (410 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
  
 0.846
sufD
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
 
 0.835
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 
 0.805
sync_0942
Fe-S metabolism protein, SufE family protein; Identified by match to protein family HMM PF02657.
  
 
 0.774
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.681
sync_0637
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
sync_0638
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
sync_0616
Uncharacterized protein.
  
     0.447
sync_1720
Conserved hypothetical protein.
 
     0.421
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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