STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0736Muconate cycloisomerase; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (368 aa)    
Predicted Functional Partners:
sync_0737
Uncharacterized conserved protein; Identified by match to protein family HMM PF07755.
 
     0.886
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.538
sync_0732
Conserved hypothetical protein.
 
     0.516
sync_0739
Conserved hypothetical protein.
 
     0.511
sync_0861
Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
  
     0.496
ddl
D-alanine--D-alanine ligase; Cell wall formation.
     
 0.494
sync_1335
Conserved hypothetical protein.
  
     0.480
sync_0733
Uncharacterized secreted or membrane protein.
       0.440
sync_0741
FAD linked oxidase, N-terminal; Identified by match to protein family HMM PF01565.
 
   
 0.433
sync_0740
Identified by match to protein family HMM PF07969.
       0.426
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.