Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0739Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
sync_0740
Identified by match to protein family HMM PF07969.
 
     0.811
sync_0737
Uncharacterized conserved protein; Identified by match to protein family HMM PF07755.
 
     0.787
sync_1332
Conserved hypothetical protein.
  
     0.762
sync_0782
Conserved hypothetical protein; Identified by similarity to GB:CAE20532.1; match to protein family HMM PF03992.
  
     0.745
sync_0118
Conserved hypothetical protein.
  
     0.740
sync_2602
Uncharacterized conserved protein; Identified by match to protein family HMM PF02698.
  
     0.719
sync_1225
Conserved hypothetical protein.
  
     0.718
sync_0128
CotB mutant.
  
     0.696
sync_2052
Conserved hypothetical protein.
  
     0.690
psbX
Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.
  
     0.684
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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