STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0741FAD linked oxidase, N-terminal; Identified by match to protein family HMM PF01565. (426 aa)    
Predicted Functional Partners:
sync_0740
Identified by match to protein family HMM PF07969.
 
     0.828
sync_0210
Glycolate oxidase chain; Identified by match to protein family HMM PF01565.
  
     0.729
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.716
sync_1991
Creatininase; Identified by match to protein family HMM PF02633.
     0.674
sync_0387
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.655
sync_0213
Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
 
  
 0.596
sync_0739
Conserved hypothetical protein.
       0.522
sync_0737
Uncharacterized conserved protein; Identified by match to protein family HMM PF07755.
 
     0.514
sync_0154
Membrane protein, putative.
   
 
 0.435
sync_0736
Muconate cycloisomerase; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.433
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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