sync_0742 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0742

Conserved hypothetical protein; Identified by match to protein family HMM PF00805. (190 aa)

Predicted Functional Partners:

sync_2716

0.765

sync_0514

0.761

sync_0743

0.668

argD

0.668

gyrB

0.523

sync_2608

0.406

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argD	sync_0742	sync_0744	sync_0742	Acetylornithine aminotransferase (ACOAT); Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.668
argD	sync_0743	sync_0744	sync_0743	Acetylornithine aminotransferase (ACOAT); Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Putative folylpolyglutamate synthase; Identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.	0.814
gyrB	sync_0514	sync_0092	sync_0514	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Identified by match to protein family HMM PF00805.	0.523
gyrB	sync_0742	sync_0092	sync_0742	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.523
gyrB	sync_2716	sync_0092	sync_2716	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.523
sync_0514	gyrB	sync_0514	sync_0092	Identified by match to protein family HMM PF00805.	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	0.523
sync_0514	sync_0742	sync_0514	sync_0742	Identified by match to protein family HMM PF00805.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.761
sync_0514	sync_2716	sync_0514	sync_2716	Identified by match to protein family HMM PF00805.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.774
sync_0742	argD	sync_0742	sync_0744	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Acetylornithine aminotransferase (ACOAT); Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.668
sync_0742	gyrB	sync_0742	sync_0092	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	0.523
sync_0742	sync_0514	sync_0742	sync_0514	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Identified by match to protein family HMM PF00805.	0.761
sync_0742	sync_0743	sync_0742	sync_0743	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Putative folylpolyglutamate synthase; Identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.	0.668
sync_0742	sync_2608	sync_0742	sync_2608	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Phytoene desaturase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731.	0.406
sync_0742	sync_2716	sync_0742	sync_2716	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.765
sync_0743	argD	sync_0743	sync_0744	Putative folylpolyglutamate synthase; Identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.	Acetylornithine aminotransferase (ACOAT); Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.814
sync_0743	sync_0742	sync_0743	sync_0742	Putative folylpolyglutamate synthase; Identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.668
sync_2608	sync_0742	sync_2608	sync_0742	Phytoene desaturase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.406
sync_2716	gyrB	sync_2716	sync_0092	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	0.523
sync_2716	sync_0514	sync_2716	sync_0514	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Identified by match to protein family HMM PF00805.	0.774
sync_2716	sync_0742	sync_2716	sync_0742	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	Conserved hypothetical protein; Identified by match to protein family HMM PF00805.	0.765