STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0753Hydrogenase accessory protein or high-affinity nickel-transport protein homolog, membrane protein. (197 aa)    
Predicted Functional Partners:
sync_1036
Uncharacterized protein.
  
     0.713
sync_0551
Neutral invertase like protein; Identified by match to protein family HMM PF04853.
  
     0.590
sync_0752
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.567
sync_0370
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.532
psaL
Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.
  
     0.528
sync_1194
Possible oxidoreductase; Identified by match to protein family HMM PF01565.
  
     0.442
sync_0057
Putative photosystem I assembly related protein Ycf37; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.441
sync_1833
Conserved hypothetical protein; Identified by similarity to GB:CAE19449.1.
  
     0.418
sync_0141
Glycosyl transferase family 11.
  
     0.413
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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