STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodXNickel-type superoxide dismutase maturation protease; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02754. (99 aa)    
Predicted Functional Partners:
sodN
Superoxide dismutase, Ni; Identified by similarity to SP:P80734; match to protein family HMM TIGR02753.
 
   
 0.938
sync_2583
Membrane protein, putative.
  
     0.647
sync_1102
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF07681.
  
     0.609
sync_1952
Conserved hypothetical protein.
  
     0.593
sync_2169
Conserved hypothetical protein; Identified by match to protein family HMM PF03929.
  
     0.547
sync_1825
Uncharacterized protein.
  
     0.535
sync_0106
Transporter, solute:sodium symporter (SSS) family protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.524
sync_0756
FKBP-type peptidyl-prolyl cis-trans isomerase; Identified by match to protein family HMM PF00254.
       0.523
sync_1754
Putative membrane protein; Identified by similarity to GB:CAE20407.1.
  
     0.515
sync_0733
Uncharacterized secreted or membrane protein.
  
     0.504
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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