Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0765DnaJ domain protein; Identified by match to protein family HMM PF00226. (732 aa)    
Predicted Functional Partners:
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.928
sync_1271
Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
 
 
 0.814
sync_1540
Bacterial regulatory proteins, Crp family protein.
  
 
   0.770
sync_0937
Conserved hypothetical protein.
  
     0.768
sync_0370
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.766
sync_0376
Uncharacterized protein.
  
     0.766
sync_1721
CheY-like domain containing protein.
  
     0.766
sync_1880
Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.
  
  
 0.766
sync_2124
AbrB family transciptional regulator.
  
     0.766
sync_1860
Membrane associated GTPase.
  
     0.762
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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