STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0805Zeta-carotene desaturase. (538 aa)    
Predicted Functional Partners:
sync_1408
Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.
  
     0.737
sync_2460
Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.
  
     0.703
cytA-2
Cytochrome c, class IC:Cytochrome c, class I; Identified by match to protein family HMM PF00034.
  
     0.694
sync_1407
Conserved hypothetical protein; Identified by similarity to GB:CAE20864.1.
  
     0.662
sync_1523
Uncharacterized protein.
  
     0.639
sync_1890
Possible cytochrome C6 (soluble cytochrome F) (cytochrome c553); Identified by match to protein family HMM PF00034.
  
     0.636
sync_1581
Identified by match to protein family HMM PF05419.
  
     0.620
sync_1825
Uncharacterized protein.
  
     0.612
cytA-1
Cytochrome c, class IC:Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
  
     0.606
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.605
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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