STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0818Conserved hypothetical protein; Identified by similarity to GB:CAE20548.1; match to protein family HMM PF04685. (833 aa)    
Predicted Functional Partners:
sync_1563
Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.
  
 
 0.918
sync_2052
Conserved hypothetical protein.
  
 
   0.708
sync_1024
Conserved hypothetical protein.
  
     0.706
sync_1142
Conserved hypothetical protein.
  
     0.678
sync_0444
Conserved hypothetical protein.
  
     0.665
psbM
Photosystem II reaction center protein PsbM; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface.
  
     0.632
sync_1979
Conserved hypothetical protein.
  
     0.619
sync_0128
CotB mutant.
  
     0.597
sync_0313
Uncharacterized protein.
  
     0.596
sync_2206
Conserved hypothetical protein.
  
     0.588
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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