STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0902N2,N2-dimethylguanosine tRNA methyltransferase; Identified by match to protein family HMM PF02005. (416 aa)    
Predicted Functional Partners:
sync_0151
Putative phosphatase; Identified by match to protein family HMM PF00782.
  
    0.691
sync_2471
Conserved hypothetical protein.
  
     0.636
sync_2723
Conserved hypothetical protein.
  
     0.628
kaiA
Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]
  
     0.596
sync_0901
Predicted alpha/beta hydrolase superfamily protein; Identified by match to protein family HMM PF00561.
       0.591
sync_2628
Conserved hypothetical protein.
  
     0.590
ilvN
Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.
       0.587
sync_2344
Conserved hypothetical protein; Identified by similarity to GB:AAQ00671.1.
  
     0.574
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.545
sync_2588
Possible ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.
  
     0.544
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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