sync_0918 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0918

Alpha/beta superfamily hydrolase. (366 aa)

Predicted Functional Partners:

sync_0915

0.800

sync_0916

0.800

pntB

0.800

sync_0914

0.537

sync_1817

0.410

sync_0913

0.404

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pntB	sync_0913	sync_0917	sync_0913	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	Hypothetical protein; Identified by Glimmer2; putative.	0.404
pntB	sync_0914	sync_0917	sync_0914	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	Conserved hypothetical protein.	0.537
pntB	sync_0915	sync_0917	sync_0915	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	0.999
pntB	sync_0916	sync_0917	sync_0916	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	NAD/NADP transhydrogenase alpha subunit.	0.999
pntB	sync_0918	sync_0917	sync_0918	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	Alpha/beta superfamily hydrolase.	0.800
sync_0913	pntB	sync_0913	sync_0917	Hypothetical protein; Identified by Glimmer2; putative.	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.404
sync_0913	sync_0914	sync_0913	sync_0914	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.563
sync_0913	sync_0915	sync_0913	sync_0915	Hypothetical protein; Identified by Glimmer2; putative.	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	0.404
sync_0913	sync_0916	sync_0913	sync_0916	Hypothetical protein; Identified by Glimmer2; putative.	NAD/NADP transhydrogenase alpha subunit.	0.404
sync_0913	sync_0918	sync_0913	sync_0918	Hypothetical protein; Identified by Glimmer2; putative.	Alpha/beta superfamily hydrolase.	0.404
sync_0914	pntB	sync_0914	sync_0917	Conserved hypothetical protein.	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.537
sync_0914	sync_0913	sync_0914	sync_0913	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.563
sync_0914	sync_0915	sync_0914	sync_0915	Conserved hypothetical protein.	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	0.537
sync_0914	sync_0916	sync_0914	sync_0916	Conserved hypothetical protein.	NAD/NADP transhydrogenase alpha subunit.	0.537
sync_0914	sync_0918	sync_0914	sync_0918	Conserved hypothetical protein.	Alpha/beta superfamily hydrolase.	0.537
sync_0915	pntB	sync_0915	sync_0917	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.999
sync_0915	sync_0913	sync_0915	sync_0913	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	Hypothetical protein; Identified by Glimmer2; putative.	0.404
sync_0915	sync_0914	sync_0915	sync_0914	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	Conserved hypothetical protein.	0.537
sync_0915	sync_0916	sync_0915	sync_0916	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	NAD/NADP transhydrogenase alpha subunit.	0.996
sync_0915	sync_0918	sync_0915	sync_0918	NAD/NADP transhydrogenase alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.	Alpha/beta superfamily hydrolase.	0.800