sync_0919 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0919

Ferredoxin. (111 aa)

Predicted Functional Partners:

sync_0892

0.917

dxr

0.800

ndhD

0.580

sync_1958

0.580

ndhD-2

0.580

sync_0921

0.564

cbiG/cobJ

0.498

ndhA

0.427

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbiG/cobJ	sync_0919	sync_0391	sync_0919	cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.	Ferredoxin.	0.498
dxr	sync_0919	sync_0920	sync_0919	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.	Ferredoxin.	0.800
dxr	sync_0921	sync_0920	sync_0921	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.	Na+-dependent transporter of the SNF family protein; Identified by match to protein family HMM PF00209.	0.570
ndhA	ndhD	sync_2625	sync_1870	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.989
ndhA	ndhD-2	sync_2625	sync_2614	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.991
ndhA	sync_0919	sync_2625	sync_0919	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	Ferredoxin.	0.427
ndhA	sync_1958	sync_2625	sync_1958	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.998
ndhD	ndhA	sync_1870	sync_2625	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	0.989
ndhD	ndhD-2	sync_1870	sync_2614	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.904
ndhD	sync_0919	sync_1870	sync_0919	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	Ferredoxin.	0.580
ndhD	sync_1958	sync_1870	sync_1958	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.910
ndhD-2	ndhA	sync_2614	sync_2625	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	0.991
ndhD-2	ndhD	sync_2614	sync_1870	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.904
ndhD-2	sync_0919	sync_2614	sync_0919	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	Ferredoxin.	0.580
ndhD-2	sync_1958	sync_2614	sync_1958	NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.912
sync_0892	sync_0919	sync_0892	sync_0919	Ferredoxin; Identified by match to protein family HMM PF00111.	Ferredoxin.	0.917
sync_0919	cbiG/cobJ	sync_0919	sync_0391	Ferredoxin.	cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.	0.498
sync_0919	dxr	sync_0919	sync_0920	Ferredoxin.	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.	0.800
sync_0919	ndhA	sync_0919	sync_2625	Ferredoxin.	NADH dehydrogenase I chain 1 (or H); NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	0.427
sync_0919	ndhD	sync_0919	sync_1870	Ferredoxin.	NAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.580