STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0936Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. (453 aa)    
Predicted Functional Partners:
sync_0937
Conserved hypothetical protein.
 
     0.871
sync_1880
Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.
  
   
 0.729
sync_1540
Bacterial regulatory proteins, Crp family protein.
  
     0.718
sync_0733
Uncharacterized secreted or membrane protein.
  
     0.694
sync_2916
Identified by match to protein family HMM PF04932.
  
     0.689
sync_0306
Repeats containing protein.
  
     0.683
sync_2713
Uncharacterized secreted protein.
  
     0.678
sync_0469
Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1.
  
     0.674
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
 
 
 0.674
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.671
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.