Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppBABC-type oligopeptide transport system permease; Identified by match to protein family HMM PF00528. (339 aa)    
Predicted Functional Partners:
dppC
ABC-type peptide transporter permease component; Identified by match to protein family HMM PF00528.
 0.999
sync_0939
ABC transporter, substrate binding protein, possibly oligopeptides; Identified by match to protein family HMM PF00496.
 
 0.999
sync_2703
ABC transporter, ATP binding component, possibly for oligopeptides; Identified by match to protein family HMM PF00005.
 
 0.998
sync_0940
Conserved hypothetical protein.
       0.693
hom
Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.
       0.556
sync_0387
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
   
  
 0.507
sync_0942
Fe-S metabolism protein, SufE family protein; Identified by match to protein family HMM PF02657.
       0.505
sync_0944
Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.461
sync_0943
Conserved hypothetical protein; Identified by similarity to GB:CAE21316.1.
       0.404
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (20%) [HD]