STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0977Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (278 aa)    
Predicted Functional Partners:
sync_1429
Lactose transport system permease protein; Identified by match to protein family HMM PF00528.
 0.993
sync_0114
Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.
 
 0.980
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
 
 0.969
sync_2395
Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.954
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.943
sync_1402
ABC transporter for sugars, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.835
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
    0.769
sync_2811
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.666
sync_2817
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.666
sync_0975
Uncharacterized conserved protein; Identified by match to protein family HMM PF03065; Belongs to the glycosyl hydrolase 57 family.
       0.497
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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