sync_1019 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1019

Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1. (159 aa)

Predicted Functional Partners:

sync_2139

0.771

sync_0306

0.769

sync_0563

0.759

kaiA

0.759

sync_2918

0.759

sync_2084

0.758

sync_0392

0.757

sync_1880

0.754

sync_2628

0.751

sync_2811

0.750

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
kaiA	sync_0392	sync_2222	sync_0392	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Proline-rich region.	0.752
kaiA	sync_0563	sync_2222	sync_0563	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Uncharacterized protein.	0.753
kaiA	sync_1019	sync_2222	sync_1019	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.	0.759
kaiA	sync_2084	sync_2222	sync_2084	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Conserved hypothetical protein.	0.691
kaiA	sync_2139	sync_2222	sync_2139	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Conserved hypothetical protein.	0.667
kaiA	sync_2628	sync_2222	sync_2628	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Conserved hypothetical protein.	0.752
kaiA	sync_2918	sync_2222	sync_2918	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.	0.592
sync_0306	sync_0392	sync_0306	sync_0392	Repeats containing protein.	Proline-rich region.	0.695
sync_0306	sync_0563	sync_0306	sync_0563	Repeats containing protein.	Uncharacterized protein.	0.611
sync_0306	sync_1019	sync_0306	sync_1019	Repeats containing protein.	Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.	0.769
sync_0306	sync_1880	sync_0306	sync_1880	Repeats containing protein.	Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.	0.774
sync_0306	sync_2084	sync_0306	sync_2084	Repeats containing protein.	Conserved hypothetical protein.	0.699
sync_0306	sync_2139	sync_0306	sync_2139	Repeats containing protein.	Conserved hypothetical protein.	0.774
sync_0306	sync_2628	sync_0306	sync_2628	Repeats containing protein.	Conserved hypothetical protein.	0.751
sync_0306	sync_2811	sync_0306	sync_2811	Repeats containing protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.738
sync_0306	sync_2918	sync_0306	sync_2918	Repeats containing protein.	Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.	0.760
sync_0392	kaiA	sync_0392	sync_2222	Proline-rich region.	Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]	0.752
sync_0392	sync_0306	sync_0392	sync_0306	Proline-rich region.	Repeats containing protein.	0.695
sync_0392	sync_0563	sync_0392	sync_0563	Proline-rich region.	Uncharacterized protein.	0.774
sync_0392	sync_1019	sync_0392	sync_1019	Proline-rich region.	Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.	0.757