STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1025Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. (246 aa)    
Predicted Functional Partners:
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 0.953
sync_1024
Conserved hypothetical protein.
       0.812
sync_0901
Predicted alpha/beta hydrolase superfamily protein; Identified by match to protein family HMM PF00561.
  
     0.731
sync_0099
Predicted hydrolase; Identified by match to protein family HMM PF00561.
  
     0.651
sync_1026
Glycerol dehydrogenase family enzyme; Identified by match to protein family HMM PF00465.
       0.580
sync_1027
Putative Clp protease, ATP-binding subunit ClpC; Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.
  
  
 0.561
sync_0154
Membrane protein, putative.
 
 
 
 0.456
sync_1473
Predicted calcineurin family phosphoesterase.
    
  0.423
rimI
Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583.
       0.413
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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