STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1026Glycerol dehydrogenase family enzyme; Identified by match to protein family HMM PF00465. (373 aa)    
Predicted Functional Partners:
sync_0649
Glycerol dehydrogenase (GLDH); Identified by match to protein family HMM PF00465.
  
  
 
0.926
glpK
Glycerol kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
     
 0.913
sync_0822
Alcohol dehydrogenase; Identified by match to protein family HMM PF00248.
     
  0.900
sync_1027
Putative Clp protease, ATP-binding subunit ClpC; Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.
  
  
 0.781
sync_1024
Conserved hypothetical protein.
       0.578
sync_1025
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
       0.575
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
      
 0.516
rimI
Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583.
       0.457
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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